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1

Invited review: Microtubule severing enzymes couple atpase activity with tubulin GTPase spring loading

Bailey, Megan E., Jiang, Nan, Dima, Ruxandra I., Ross, Jennifer L.

Journal:

Year:

2016

Language:

english

File:

PDF, 502 KB

english, 2016

2

Molecular Investigations into the Unfoldase Action of Severing Enzymes on Microtubules

Varikoti, Rohith Anand, Macke, Amanda C., Speck, Virginia, Ross, Jennifer L., Dima, Ruxandra I.

Journal:

Year:

2020

Language:

english

File:

PDF, 4.30 MB

english, 2020

3

Exploring the Role of Topological Frustration in Actin Refolding with Molecular Simulations

Lee, Ji Young, Duan, Li, Iverson, Tyler M., Dima, Ruxandra I.

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 2.88 MB

english, 2012

4

Determination of network of residues that regulate allostery in protein families using sequence analysis

Ruxandra I. Dima, D. Thirumalai

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 504 KB

english, 2006

5

Scoring functions in protein folding and design

Ruxandra I. Dima, Jayanth R. Banavar, Amos Maritan

Journal:

Protein Science

Year:

2000

Language:

english

File:

PDF, 130 KB

english, 2000

6

Pathways and Kinetic Barriers in Mechanical Unfolding and Refolding of RNA and Proteins

Changbong Hyeon, Ruxandra I. Dima, D. Thirumalai

Journal:

Year:

2006

Language:

english

File:

PDF, 2.05 MB

english, 2006

7

Mechanism of Fibrin(ogen) Forced Unfolding

Artem Zhmurov, Andre E.X. Brown, Rustem I. Litvinov, Ruxandra I. Dima, John W. Weisel, Valeri Barsegov

Journal:

Year:

2011

Language:

english

File:

PDF, 1.38 MB

english, 2011

8

Extracting Stacking Interaction Parameters for RNA from the Data Set of Native Structures

Ruxandra I. Dima, Changbong Hyeon, D. Thirumalai

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 796 KB

english, 2005

9

Allosteric Communication in Dihydrofolate Reductase: Signaling Network and Pathways for Closed to Occluded Transition and Back

Jie Chen, Ruxandra I. Dima, D. Thirumalai

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 2.59 MB

english, 2007

10

Mechanical Transition from α-Helical Coiled Coils to β-Sheets in Fibrin(ogen)

Zhmurov, Artem, Kononova, Olga, Litvinov, Rustem I., Dima, Ruxandra I., Barsegov, Valeri, Weisel, John W.

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 1.43 MB

english, 2012

11

Exploring the Contribution of Collective Motions to the Dynamics of Forced-Unfolding in Tubulin

Joshi, Harshad, Momin, Farhana, Haines, Kelly E., Dima, Ruxandra I.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 2.34 MB

english, 2010

12

Right Ventricular Function Predicts Clinical Response to Specific Vasodilator Therapy in Patients with Pulmonary Hypertension

Sorin Giusca, Ruxandra Jurcut, Ioan Mircea Coman, Ioana Ghiorghiu, Daniela Catrina, Bogdan A. Popescu, Laura Dima, Carmen Ginghina

Journal:

Echocardiography

Year:

2012

Language:

english

File:

PDF, 101 KB

english, 2012

13

Multiscale Modeling of the Nanomechanics of Microtubule Protofilaments

Theisen, Kelly E., Zhmurov, Artem, Newberry, Maycee E., Barsegov, Valeri, Dima, Ruxandra I.

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 516 KB

english, 2012

14

Structural Transitions and Energy Landscape for Cowpea Chlorotic Mottle Virus Capsid Mechanics from Nanomanipulation in Vitro and in Silico

Kononova, Olga, Snijder, Joost, Brasch, Melanie, Cornelissen, Jeroen, Dima, Ruxandra I., Marx, Kenneth A., Wuite, Gijs J.L., Roos, Wouter H., Barsegov, Valeri

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 2.04 MB

english, 2013

15

Statistical Mechanics of Protein-Like Heteropolymers

Ruxandra I. Dima, Jayanth R. Banavar, Marek Cieplak and Amos Maritan

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.16 MB

english, 1999

16

Interactions between Hydrophobic and Ionic Solutes in Aqueous Guanidinium Chloride and Urea Solutions: Lessons for Protein Denaturation Mechanism

O'Brien, Edward P., Dima, Ruxandra I., Brooks, Bernard, Thirumalai, D.

Journal:

Journal of the American Chemical Society

Year:

2007

Language:

english

File:

PDF, 398 KB

english, 2007

17

Asymmetry in the Shapes of Folded and Denatured States of Proteins †

Dima, Ruxandra I., Thirumalai, D.

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 281 KB

english, 2004

18

Molecular Investigations into the Mechanics of Actin in Different Nucleotide States

Lee, Ji Y., Iverson, Tyler M., Dima, Ruxandra I.

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 5.64 MB

english, 2011

19

Adherence to ARV medication in Romanian young adults: Self-reported behaviour and psychological barriers

Dima, Alexandra L., Schweitzer, Ana-Maria, Diaconiţǎ, Ruxandra, Remor, Eduardo, Wanless, Richard S.

Journal:

Psychology Health & Medicine

Year:

2013

Language:

english

File:

PDF, 250 KB

english, 2013

20

Exploring the Mechanical Stability of the C2 Domains in Human Synaptotagmin 1

Duan, Li, Zhmurov, Artem, Barsegov, Valeri, Dima, Ruxandra I.

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 5.61 MB

english, 2011

21

Size, shape, and flexibility of RNA structures

Hyeon, Changbong, Dima, Ruxandra I., Thirumalai, D.

Journal:

The Journal of Chemical Physics

Year:

2006

Language:

english

File:

PDF, 1.01 MB

english, 2006

22

Tubulin Bond Energies and Microtubule Biomechanics Determined from Nanoindentation in Silico

Kononova, Olga, Kholodov, Yaroslav, Theisen, Kelly E., Marx, Kenneth A., Dima, Ruxandra I., Ataullakhanov, Fazly I., Grishchuk, Ekaterina L., Barsegov, Valeri

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 4.06 MB

english, 2014

23

Extraction of interaction potentials between amino acids from native protein structures

Dima, Ruxandra I., Settanni, Giovanni, Micheletti, Cristian, Banavar, Jayanth R., Maritan, Amos

Journal:

The Journal of Chemical Physics

Year:

2000

Language:

english

File:

PDF, 396 KB

english, 2000

24

Mechanics of severing for large microtubule complexes revealed by coarse-grained simulations

Theisen, Kelly E., Desai, Neha J., Volski, Allison M., Dima, Ruxandra I.

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 2.86 MB

english, 2013

25

Stoichiometry and Topology in Protein Folding

Dima, Ruxandra I.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 193 KB

english, 2011

26

Molecular Investigations into the Mechanics of a Muscle Anchoring Complex

Bodmer, Nicholas K., Theisen, Kelly E., Dima, Ruxandra I.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

27

52 Tubulin bond energies and microtubule biomechanics determined from nanoindentation in silico

Kononova, Olga, Kholodov, Yaroslav, Theisen, Kelly E., Marx, Kenneth A., Dima, Ruxandra I., Ataullakhanov, Fazly I., Grishchuk, Ekaterina L., Barsegov, Valeri

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 244 KB

english, 2015

28

Nucleotides regulate the mechanical hierarchy between subdomains of the nucleotide binding domain of the Hsp70 chaperone DnaK

Bauer, Daniela, Merz, Dale R., Pelz, Benjamin, Theisen, Kelly E., Yacyshyn, Gail, Mokranjac, Dejana, Dima, Ruxandra I., Rief, Matthias, Žoldák, Gabriel

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

29

Modeling the effects of lattice defects on microtubule breaking and healing

Jiang, Nan, Bailey, Megan E., Burke, Jessica, Ross, Jennifer L., Dima, Ruxandra I.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.82 MB

english, 2017

30

Multi-Scale Modeling of the Nanomechanics of Microtubule Filaments

Jiang, Nan, Ross, Jennifer, Dima, Ruxandra

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 68 KB

english, 2017

31

Exploring Microtubule Breaking and Recovering Mechanisms using Large Scale Molecular Simulations

Jiang, Nan, Dima, Ruxandra

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 44 KB

english, 2017

32

Nanomechanics of the substrate binding domain of Hsp70 determine its allosteric ATP-induced conformational change

Mandal, Soumit Sankar, Merz, Dale R., Buchsteiner, Maximilian, Dima, Ruxandra I., Rief, Matthias, Žoldák, Gabriel

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.11 MB

english, 2017

33

Dynamics of microtubules: highlights of recent computational and experimental investigations

Barsegov, Valeri, Ross, Jennifer, Dima, Ruxandra

Journal:

Journal of Physics Condensed Matter

Year:

2017

Language:

english

File:

PDF, 1.81 MB

english, 2017

34

Impaired ankle-brachial index in antiphospholipid syndrome: Beyond the traditional risk factors

Caraiola, Simona, Jurcut, Ciprian, Dima, Alina, Jurcut, Ruxandra, Baicus, Cristian, Baicus, Anda

Journal:

Journal of Clinical Laboratory Analysis

Year:

2018

Language:

english

File:

PDF, 259 KB

english, 2018

35

Exploring the Unfoldase Mechanism of Microtubule Severing by Coarse-Grained Simulations

Anand Varikoti, Rohith, Ross, Jennifer L., Dima, Ruxandra I.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 44 KB

english, 2019

36

Correlation between Osteoprotegerin Levels and Antiphospholipid Syndrome Parameters

Caraiola, Simona, Dima, Alina, Jurcut, Ciprian, Jurcut, Ruxandra, Baicus, Cristian, Baicus, Anda

Journal:

Laboratory Medicine

Year:

2019

Language:

english

File:

PDF, 165 KB

english, 2019

37

Mechanical Stability of Microtubule Lattices - Molecular Dynamic Indentation Studies

Szatkowski, Lukasz, Dale, Merz R., Ross, Jennifer L., Dima, Ruxandra I.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 44 KB

english, 2019

38

Physiciansâ Perspectives on COVID-19: An International Survey

Dima, Alina, Balaban, Daniel Vasile, Jurcut, Ciprian, Berza, Ioana, Jurcut, Ruxandra, Jinga, Mariana

Journal:

Healthcare (MDPI AG)

Year:

2020

File:

PDF, 273 KB

2020

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